Index

A

adjacency_list (pymethods.algorithms.BreadthFirstSearch attribute) AliasDict (class in pymethods.utils) alignShapesToMean() (pymethods.algorithms.shapeModelling.PointDistributionModel method) all_diameters() (in module pymethods.math) Angle (class in pymethods.arrays) angle() (pymethods.arrays.Vector method) append_process() (pymethods.multiprocess.NumpyMulti method)

approximate_basis() (in module pymethods.math) approximate_normal() (in module pymethods.math) area() (in module pymethods.math) area_assumed_diameter() (in module pymethods.math) argSortByBasis() (in module pymethods.math) Array (class in pymethods.arrays) as_numpy() (pymethods.arrays.Vector method)

B

Base (class in pymethods.construct.angiography.vessel) Basis (class in pymethods.arrays) bifCenterline1 (pymethods.parse.angiography.Folder attribute) bifCenterline2 (pymethods.parse.angiography.Folder attribute) BifCoreEllipseSetellipseSet (pymethods.parse.angiography.Folder attribute)

Bifur (in module pymethods.construct.angiography.vessel) bifur_centerline_id (pymethods.parse.angiography.CenterlinesA attribute) (pymethods.parse.angiography.CenterlinesB attribute) (pymethods.parse.angiography.OrientCenterlinesBase attribute) BreadthFirstSearch (class in pymethods.algorithms) build() (pymethods.algorithms.shapeModelling.PointDistributionModel method)

C

can_lsq_fit() (pymethods.algorithms.curvature_fitting method) cart2pol() (in module pymethods.math) case_sensitive (pymethods.utils.IsSubsetString attribute) centerline1 (pymethods.parse.angiography.Folder attribute) centerline2 (pymethods.parse.angiography.Folder attribute) centerline_id (pymethods.construct.angiography.vessel.Base attribute) CenterlinesA (class in pymethods.parse.angiography) CenterlinesB (class in pymethods.parse.angiography) change_basis() (in module pymethods.math) change_reference_frame() (pymethods.arrays.Vector method) check() (pymethods.utils.IsAny method) (pymethods.utils.Isin method) (pymethods.utils.Isinstance method) (pymethods.utils.Issubclass method) chunk_iterable() (in module pymethods.utils) clean() (pymethods.algorithms.BreadthFirstSearch method) (pymethods.parse.angiography.Folder method) clean_local() (pymethods.ssh.client.FOAM method) clean_remote() (pymethods.ssh.client.FOAM method) Client (class in pymethods.ssh.client) close_curve() (in module pymethods.math) ColumnVector (class in pymethods.arrays)

comaprison_objects (pymethods.utils.IsAny attribute) (pymethods.utils.Isin attribute) (pymethods.utils.Isinstance attribute) (pymethods.utils.Issubclass attribute) connect() (pymethods.ssh.client.Client method) construct() (pymethods.construct.angiography.vessel.Base method) (pymethods.construct.ivoct.VesselSurface method) Contour (class in pymethods.arrays) contour() (pymethods.algorithms.transfinite_interpolation.Transfinite2d property) contour_centroid() (in module pymethods.math) contour_id (pymethods.construct.angiography.vessel.Base attribute) copyLocalToRemote_Directory() (pymethods.ssh.client.Client method) (pymethods.ssh.client.FOAM method) copyRemoteToLocal_Directory() (pymethods.ssh.client.Client method) (pymethods.ssh.client.FOAM method) cross() (in module pymethods.math) (pymethods.arrays.Vector method) CrossSectionEllipseSet1 (pymethods.parse.angiography.Folder attribute) CrossSectionEllipseSet2 (pymethods.parse.angiography.Folder attribute) cummulative_decompose() (in module pymethods.utils) Curve (class in pymethods.arrays) Cylinder (class in pymethods.arrays) CylindricalPointModel (class in pymethods.algorithms.shapeModelling)

D

Data (class in pymethods.parse.angiography) data() (pymethods.parse.angiography.OrientCenterlinesBase method) (pymethods.parse.ivoct.Folder method) data_scaled() (pymethods.parse.ivoct.Folder method) decompose_arrays() (pymethods.multiprocess.NumpyMulti method) decomposed_string() (pymethods.utils.IsSubsetString property) deg() (pymethods.arrays.Angle property) deg_to_rad() (pymethods.arrays.Angle class method)

deleteRemote_Directory() (pymethods.ssh.client.Client method) Descriptor (class in pymethods.utils) direct_vector() (pymethods.arrays.Vector method) directed_angle() (in module pymethods.math) (pymethods.arrays.Vector method) disconnect() (pymethods.ssh.client.Client method) Disk (class in pymethods.arrays) dot() (in module pymethods.math) (pymethods.arrays.Vector method)

E

Ellipsoid (class in pymethods.arrays) enumerate_chunk() (in module pymethods.utils) equal_aspect_3d() (in module pymethods.pyplot)

equal_aspect_3d_centered() (in module pymethods.pyplot) explained_variance() (pymethods.algorithms.shapeModelling.PointDistributionModel method) (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace method)

F

figure_3d() (in module pymethods.pyplot) filenames() (pymethods.parse.angiography.Folder property) files() (pymethods.parse.angiography.Folder property) FlatContour (class in pymethods.arrays) FOAM (class in pymethods.ssh.client)

Folder (class in pymethods.parse.angiography) (class in pymethods.parse.ivoct) frennet_serret() (in module pymethods.math) frennet_serret_with_transport() (in module pymethods.math) fromNP() (pymethods.parse.angiography.Folder static method)

G

gap_space() (in module pymethods.utils) gcfa3d() (in module pymethods.pyplot) generateShape() (pymethods.algorithms.shapeModelling.PointDistributionModel method) get_contour() (pymethods.parse.ivoct.Image method)

get_filepath() (pymethods.parse.angiography.Folder method) get_landmark_vector() (pymethods.parse.ivoct.Image method) grabContourOrLandmarkFromList() (pymethods.parse.ivoct.Folder static method) grabParseSave() (pymethods.parse.angiography.Folder method)

H

hex_memory() (in module pymethods.utils)

I

Image (class in pymethods.parse.ivoct) is_1d() (in module pymethods.utils) is_ax_3d() (in module pymethods.pyplot) is_gca_3d() (in module pymethods.pyplot) is_linearly_dependent() (in module pymethods.math)

is_none() (in module pymethods.utils) IsAny (class in pymethods.utils) Isin (class in pymethods.utils) Isinstance (class in pymethods.utils) Issubclass (class in pymethods.utils) IsSubsetString (class in pymethods.utils)

J

join_all_processes() (pymethods.multiprocess.NumpyMulti method)

L

l2_norm() (in module pymethods.math) least_squares_fitting_of_two_point_sets() (in module pymethods.math) len_dim_shape_axis() (in module pymethods.utils) len_dim_shape_longest() (in module pymethods.utils) len_dim_shape_shortest() (in module pymethods.utils)

len_shape() (in module pymethods.utils) LenDimShape (class in pymethods.utils) linesToArray() (pymethods.parse.angiography.Data class method) load() (pymethods.parse.ivoct.Folder method) LockedDescriptor (class in pymethods.utils)

M

magnitude() (pymethods.arrays.Vector method) Main (in module pymethods.construct.angiography.vessel) main_centerline_id (pymethods.parse.angiography.CenterlinesA attribute) (pymethods.parse.angiography.CenterlinesB attribute) (pymethods.parse.angiography.OrientCenterlinesBase attribute) main_string (pymethods.utils.IsSubsetString attribute) make_3d() (in module pymethods.math) (pymethods.arrays.Basis method) (pymethods.arrays.Vector method) make_column() (in module pymethods.utils) (pymethods.arrays.Vector method) make_job_script() (pymethods.ssh.client.FOAM method) make_linearly_independent() (in module pymethods.math) make_odd() (in module pymethods.utils) make_row() (in module pymethods.utils) mean() (in module pymethods.math) mean_square() (in module pymethods.math) mean_square_error() (in module pymethods.math) memory_size() (in module pymethods.utils) mesh2d (class in pymethods.algorithms.elliptic_mesh_generation)

mesh_vtk() (pymethods.algorithms.transfinite_interpolation.TransfiniteCylinder method) meshStretch2d (class in pymethods.algorithms.elliptic_mesh_generation) Meta (class in pymethods.construct.angiography.vessel) MetaClient (class in pymethods.ssh.client) MetaOrientCenterlines (class in pymethods.parse.angiography) minimum_bounding_box() (in module pymethods.math) modify_lines() (pymethods.ssh.client.FOAM method) module pymethods.algorithms.elliptic_mesh_generation pymethods.algorithms.shapeModelling pymethods.arrays pymethods.construct pymethods.construct.angiography.vessel pymethods.math pymethods.multiprocess.ssh pymethods.parse pymethods.parse.angiography pymethods.parse.ivoct pymethods.pyplot pymethods.ssh.client pymethods.utils

N

NoInputFunctionAlias (class in pymethods.utils) normalize() (in module pymethods.math) (pymethods.arrays.Vector method)

numpy_files() (pymethods.parse.angiography.Folder property) NumpyMulti (class in pymethods.multiprocess)

O

objectiveFunction() (pymethods.algorithms.shapeModelling.PointDistributionModel method)

order_basis() (in module pymethods.math) OrientCenterlinesBase (class in pymethods.parse.angiography)

P

parsable_classes (pymethods.parse.angiography.Folder attribute) parse() (pymethods.parse.angiography.OrientCenterlinesBase method) (pymethods.parse.ivoct.Folder method) parse_filepath() (pymethods.parse.angiography.Folder method) perpendicular() (pymethods.arrays.Vector method) plot2d() (pymethods.arrays.Vector method) plot3d() (pymethods.arrays.Vector method) PointDistributionModel (class in pymethods.algorithms.shapeModelling) PointDistributionModel.NDSpace (class in pymethods.algorithms.shapeModelling) Pointsurface (class in pymethods.arrays) pol2cart() (in module pymethods.math) postProcessBuilt() (pymethods.algorithms.shapeModelling.CylindricalPointModel method) (pymethods.algorithms.shapeModelling.PointDistributionModel method) postProcessGenerated() (pymethods.algorithms.shapeModelling.CylindricalPointModel method) (pymethods.algorithms.shapeModelling.PointDistributionModel method) (pymethods.algorithms.shapeModelling.PyVistaPointDistributionModel method) process() (pymethods.multiprocess.NumpyMulti static method) project_to_plane() (in module pymethods.math) (pymethods.arrays.Vector method) pts_mesh() (pymethods.algorithms.transfinite_interpolation.TransfiniteCylinder method) pts_mesh_column() (pymethods.algorithms.transfinite_interpolation.TransfiniteCylinder method) pymethods.algorithms.elliptic_mesh_generation module pymethods.algorithms.shapeModelling module

pymethods.arrays module pymethods.construct module pymethods.construct.angiography.vessel module pymethods.math module pymethods.multiprocess.ssh module pymethods.parse module pymethods.parse.angiography module pymethods.parse.ivoct module pymethods.pyplot module pymethods.ssh.client module pymethods.utils module PyVistaPointDistributionModel (class in pymethods.algorithms.shapeModelling)

Q

query_current_vertex() (pymethods.algorithms.BreadthFirstSearch method) quick_run() (pymethods.ssh.client.FOAM method) quickrun() (pymethods.parse.angiography.Folder method) quiver2d() (pymethods.arrays.Vector method)

quiver3d() (pymethods.arrays.Vector method) quiverly() (pymethods.arrays.Basis method) (pymethods.arrays.Vector method) (pymethods.arrays.Vectorspace method)

R

rad() (pymethods.arrays.Angle property) rad_to_deg() (pymethods.arrays.Angle class method) recommendedAmountModes() (pymethods.algorithms.shapeModelling.PointDistributionModel method) reconstruct_arrays() (pymethods.multiprocess.NumpyMulti method) recoverDimensions() (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace method) register_key() (pymethods.utils.AliasDict method) remote_runner() (in module pymethods.multiprocess.ssh)

reset_progress_bar() (pymethods.algorithms.BreadthFirstSearch method) rotate_around_vector() (pymethods.arrays.Vector method) rotation_matrix() (in module pymethods.math) (pymethods.arrays.Vector method) run() (pymethods.multiprocess.NumpyMulti method) (pymethods.multiprocess.ssh.SpartanFOAM method) run_foam() (pymethods.ssh.client.FOAM method)

S

save() (pymethods.construct.ivoct.VesselSurface method) (pymethods.parse.angiography.Folder method) (pymethods.parse.ivoct.Folder method) scalar_project() (in module pymethods.math) (pymethods.arrays.Vector method) scatter2d() (pymethods.arrays.Vector method) scatter3d() (pymethods.arrays.Vector method) scatterly() (pymethods.arrays.Vector method) SequentialFunction (class in pymethods.utils) set_dim_extractor() (pymethods.utils.LenDimShape method) skew_symmetric() (pymethods.arrays.Basis method) (pymethods.arrays.Vector method)

skew_symmetric_3d() (in module pymethods.math) smallest_angle_between_vectors() (in module pymethods.math) sort_pair_list_and_extract_items() (in module pymethods.utils) sortByBasis() (in module pymethods.math) SpartanFOAM (class in pymethods.multiprocess.ssh) (class in pymethods.ssh.client) Sphere (class in pymethods.arrays) start_all_processes() (pymethods.multiprocess.NumpyMulti method) step_progress_bar() (pymethods.algorithms.BreadthFirstSearch method) surfaceClean() (pymethods.construct.ivoct.VesselSurface method) svd() (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace method)

T

time_func() (in module pymethods.utils) to_vtk() (pymethods.arrays.Basis method) (pymethods.arrays.Curve method) (pymethods.arrays.Pointsurface method) (pymethods.arrays.Vector method)

Torus (class in pymethods.arrays) Transfinite2d (class in pymethods.algorithms.transfinite_interpolation) TransfiniteCylinder (class in pymethods.algorithms.transfinite_interpolation)

U

U (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace attribute)

V

V_T (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace attribute) Vector (class in pymethods.arrays) vector_perpendicular() (in module pymethods.math)

vector_project() (in module pymethods.math) (pymethods.arrays.Vector method) Vectorspace (class in pymethods.arrays) VesselSurface (class in pymethods.construct.ivoct)

W

W (pymethods.algorithms.shapeModelling.PointDistributionModel.NDSpace attribute)

worker() (pymethods.multiprocess.NumpyMulti static method)